Patterns pl.patterns

Plot contribution scores and analyze them using tfmodisco.

contribution_scores(scores, seqs_one_hot[, ...])	Visualize interpretation scores with optional highlighted positions.
modisco_results(classes, contribution, ...)	Plot genomic contributions for the given classes.
enhancer_design_steps_contribution_scores(...)	Visualize enhancer design stepwise contribution scores.
enhancer_design_steps_predictions(...[, ...])	Visualize enhancer design prediction score progression.
selected_instances(pattern_dict, idcs)	Plot the patterns specified by the indices in idcs from the pattern_dict.
class_instances(pattern_dict, idx[, ...])	Plot instances of a specific pattern, either the representative pattern per class or all instances for a given pattern index.
clustermap(pattern_matrix, classes[, ...])	Create a clustermap from the given pattern matrix and class labels with customizable options.
clustermap_tf_motif(data[, heatmap_dim, ...])	Generate a heatmap where one modality is represented as color, and the other as dot size.
tf_expression_per_cell_type(df, tf_list[, ...])	Plot the expression levels of specified transcription factors (TFs) per cell type.
similarity_heatmap(similarity_matrix, indices)	Plot a similarity heatmap of all pattern indices.