crested.pl.locus.track

crested.pl.locus.track(scores, range=None, title=None, ylim=None, **kwargs)

Plot a predicted locus track, like a Borzoi prediction or BigWig track.

Function is still in beta, and its API can be changed in future updates. Default figure size is (20, 3).

Parameters:

• scores – A 1d numpy array of heights along the track.

• range (default: None) – A tuple of coordinates that are being plotted between, as (chr, start, end) or (start, end)

• title (default: None) – The title of the plot.

• ylim (default: None) – Y limits for the plot.

• kwargs – Additional arguments passed to render_plot() to control the final plot output. Please see render_plot() for details.

See also

crested.pl.render_plot, crested.utils.read_bigwig_region

Example

>>> crested.pl.locus.track(
...     preds[0, :, class_idx],
...     range=(chrom, start, end),
...     title="Mouse Borzoi ATAC:MGL predictions around the FIRE enhancer"
... )